networkcommons.eval.run_ora

networkcommons.eval.run_ora(graph, net, metric='ora_Combined score', ascending=False, **kwargs)

Run over-representation analysis on a custom set of genes.

Parameters:

• graph (nx.Graph, nx.DiGraph) – A (contextualised) graph.

• net (pd.DataFrame) – A DataFrame containing source (gene set name) and

• columns (target)

• interest. (and containing the gene sets of)

• **kwargs – Additional keyword arguments to pass to the function

• decoupler.get_ora_df().

Returns:

The results of the over-representation analysis.

Return type:

pd.DataFrame