0.5.0

Main

Bridging the gap between data, methods and knowledge in the network inference field
Installation
API

Details

Data
Methods
Evaluation strategies

Contribution guidelines

General guidelines for contribution
Contribution’s guideline: Data
Contribution’s guideline: Methods
Contribution’s guideline: Evaluation strategies

Vignettes

Vignette 1: Introduction to NetworkCommons
Vignette 2: Using multiple methods to infer the networks
Vignette 3: Evaluating methods under two scenarios: offtarget recovery and pathway activity
Vignette 4: Sensitive response to drug perturbation using phosphoproteomics
Vignette 5: Multi-omics validation - Recovery of dysregulated kinases in response to cancer mutations

Additional resources

Vignette A: recursive propagation with MOON
Vignette B: Pertpy bridging to NetworkCommons

NetworkCommons

API
networkcommons.data.omics.datasets
Edit on GitHub

networkcommons.data.omics.datasets

networkcommons.data.omics.datasets()

Built-in omics datasets.

Return type:: DataFrame
Returns:: A DataFrame with dataset details.

Previous Next

© Copyright 2025, NetworkCommons developers.