0.5.0
Main
Bridging the gap between data, methods and knowledge in the network inference field
Installation
API
Methods
SignalingProfiler
Prior Knowledge
Datasets
Evaluation and description
Visualization
networkcommons.visual.NetworkXVisualizer
networkcommons.visual.YFilesVisualizer
networkcommons.visual.get_styles
networkcommons.visual.set_style_attributes
networkcommons.visual.merge_styles
networkcommons.visual.get_comparison_color
networkcommons.visual.get_edge_color
networkcommons.visual.update_node_property
update_node_property()
networkcommons.visual.update_edge_property
networkcommons.visual.apply_node_style
networkcommons.visual.apply_edge_style
networkcommons.visual.build_volcano_plot
networkcommons.visual.build_ma_plot
networkcommons.visual.plot_pca
networkcommons.visual.build_heatmap_with_tree
networkcommons.visual.lollipop_plot
networkcommons.visual.create_heatmap
networkcommons.visual.plot_density
networkcommons.visual.plot_scatter
networkcommons.visual.plot_rank
Utilities
Details
Data
Methods
Evaluation strategies
Contribution guidelines
General guidelines for contribution
Contribution’s guideline: Data
Contribution’s guideline: Methods
Contribution’s guideline: Evaluation strategies
Vignettes
Vignette 1: Introduction to NetworkCommons
Vignette 2: Using multiple methods to infer the networks
Vignette 3: Evaluating methods under two scenarios: offtarget recovery and pathway activity
Vignette 4: Sensitive response to drug perturbation using phosphoproteomics
Vignette 5: Multi-omics validation - Recovery of dysregulated kinases in response to cancer mutations
Additional resources
Vignette A: recursive propagation with MOON
Vignette B: Pertpy bridging to NetworkCommons
NetworkCommons
API
networkcommons.visual.update_node_property
Edit on GitHub
networkcommons.visual.update_node_property
networkcommons.visual.
update_node_property
(
node
,
type
=
'color'
,
value
=
'blue'
)