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0.5.0

Main

  • Bridging the gap between data, methods and knowledge in the network inference field
  • Installation
  • API

Details

  • Data
  • Methods
  • Evaluation strategies

Contribution guidelines

  • General guidelines for contribution
  • Contribution’s guideline: Data
  • Contribution’s guideline: Methods
  • Contribution’s guideline: Evaluation strategies

Vignettes

  • Vignette 1: Introduction to NetworkCommons
  • Vignette 2: Using multiple methods to infer the networks
  • Vignette 3: Evaluating methods under two scenarios: offtarget recovery and pathway activity
  • Vignette 4: Sensitive response to drug perturbation using phosphoproteomics
  • Vignette 5: Multi-omics validation - Recovery of dysregulated kinases in response to cancer mutations

Additional resources

  • Vignette A: recursive propagation with MOON
  • Vignette B: Pertpy bridging to NetworkCommons
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