0.5.0

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Bridging the gap between data, methods and knowledge in the network inference field
Installation
API

Details

Data
Methods
Evaluation strategies

Contribution guidelines

General guidelines for contribution
Contribution’s guideline: Data
Contribution’s guideline: Methods
Contribution’s guideline: Evaluation strategies

Vignettes

Vignette 1: Introduction to NetworkCommons
Vignette 2: Using multiple methods to infer the networks
Vignette 3: Evaluating methods under two scenarios: offtarget recovery and pathway activity
Vignette 4: Sensitive response to drug perturbation using phosphoproteomics
Vignette 5: Multi-omics validation - Recovery of dysregulated kinases in response to cancer mutations

Additional resources

Vignette A: recursive propagation with MOON
Vignette B: Pertpy bridging to NetworkCommons

NetworkCommons

API
networkcommons.visual.NetworkXVisualizer
networkcommons.visual.NetworkXVisualizer.color_nodes
Edit on GitHub

networkcommons.visual.NetworkXVisualizer.color_nodes

NetworkXVisualizer.color_nodes(): Colors nodes based on their type. Retrieves colors from the style dictionary and assigns them to nodes.

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